3 Results

3.1 Simplified genome quality inspection ofC. hainanense

A total of 49.16 GB of raw data were obtained through genotyping-by-sequencing (GBS) on 35 C. hainanense samples (Table 2). After removing the base information that could not be determined in the adapter sequence, the remaining 48.52 GB of high-quality sequencing data (Clean data), the average of each sample was 1.39 GB. In the simplified genome of C. hainanense, the average Q20 was 96.71%; the average Q30 was 90.97%. The average ratio (GC content) of guanine (G) and cytosine (C) is 40.60%. The results indicated that the sequencing quality of Q20 and Q30 was high, the GC distribution was reasonable, and the sequencing information was reliable.
Table 2 Description of the materials used and the GBS dataset