Sample |
Raw data(bp) |
Raw data |
Clean data(bp) |
Clean data |
Effective data (%) |
Q20 (%) |
Q30 (%) |
GC (%) |
BWL_1 |
8889204 |
1.33G |
8790448 |
1.31G |
98.62 |
96.64 |
90.84 |
40.71 |
BWL_2 |
9549572 |
1.43G |
9468076 |
1.42G |
98.89 |
96.88 |
91.32 |
40.50 |
BWL_3 |
7803624 |
1.17G |
7720330 |
1.15G |
98.66 |
96.64 |
90.86 |
40.62 |
BWL_4 |
11810220 |
1.77G |
11691152 |
1.75G |
98.76 |
96.86 |
91.31 |
40.45 |
BWL_5 |
9345482 |
1.40G |
9257722 |
1.39G |
98.83 |
96.85 |
91.27 |
40.22 |
BWL_6 |
10039148 |
1.51G |
9929304 |
1.49G |
98.69 |
96.79 |
91.17 |
40.46 |
BWL_7 |
12080396 |
1.81G |
11953338 |
1.79G |
98.73 |
96.63 |
90.79 |
40.58 |
BWL_8 |
7625154 |
1.14G |
7549916 |
1.13G |
98.75 |
96.85 |
91.29 |
40.52 |
JFL_1 |
10316262 |
1.55G |
10212558 |
1.53G |
98.77 |
96.72 |
91.00 |
40.47 |
JFL_2 |
7804798 |
1.17G |
7718160 |
1.15G |
98.60 |
96.52 |
90.61 |
40.81 |
JFL_3 |
11219492 |
1.68G |
11103264 |
1.66G |
98.72 |
96.81 |
91.15 |
40.73 |
JFL_4 |
8774572 |
1.32G |
8672816 |
1.30G |
98.63 |
96.61 |
90.80 |
40.41 |
JFL_5 |
4550192 |
0.68G |
4506960 |
0.67G |
98.66 |
96.70 |
90.99 |
41.15 |
DLS_1 |
6437982 |
0.97G |
6370380 |
0.95G |
98.67 |
96.53 |
90.62 |
40.83 |
DLS_2 |
9621628 |
1.44G |
9534270 |
1.43G |
98.85 |
96.94 |
91.44 |
40.24 |
DLS_3 |
9154942 |
1.37G |
9071040 |
1.36G |
98.74 |
96.87 |
91.34 |
40.85 |
DLS_4 |
8780780 |
1.32G |
8704170 |
1.30G |
98.89 |
96.58 |
90.65 |
40.34 |
DLS_5 |
9331598 |
1.40G |
9241430 |
1.38G |
98.80 |
96.21 |
89.92 |
40.52 |
DLS_6 |
6398210 |
0.96G |
6355132 |
0.95G |
98.99 |
97.12 |
91.81 |
40.54 |
DLS_7 |
10561018 |
1.58G |
10452984 |
1.56G |
98.75 |
96.53 |
90.58 |
40.78 |
DLS_8 |
7790468 |
1.17G |
7711004 |
1.15G |
98.73 |
96.55 |
90.66 |
40.87 |
DLS_9 |
11100134 |
1.67G |
10983862 |
1.64G |
98.72 |
96.62 |
90.81 |
40.92 |
DLS_10 |
15223484 |
2.28G |
15095270 |
2.26G |
98.96 |
96.78 |
91.08 |
40.59 |
HS_1 |
10318662 |
1.55G |
10230010 |
1.53G |
98.91 |
96.67 |
90.85 |
40.52 |
HS_2 |
9598258 |
1.44G |
9493420 |
1.42G |
98.65 |
96.54 |
90.66 |
41.04 |
HS_3 |
8071266 |
1.21G |
7978090 |
1.19G |
98.51 |
96.40 |
90.39 |
40.76 |
HS_4 |
6031464 |
0.90G |
5965206 |
0.89G |
98.50 |
96.67 |
90.94 |
41.34 |
HS_5 |
11441984 |
1.72G |
11325736 |
1.69G |
98.75 |
96.81 |
91.19 |
40.48 |
HS_6 |
8636182 |
1.30G |
8551474 |
1.28G |
98.77 |
96.99 |
91.62 |
40.62 |
WZS_1 |
8937320 |
1.34G |
8841150 |
1.32G |
98.64 |
96.63 |
90.82 |
39.99 |
WZS_2 |
8653196 |
1.30G |
8572226 |
1.28G |
98.80 |
96.99 |
91.58 |
40.11 |
WZS_3 |
14758962 |
2.21G |
14618492 |
2.19G |
98.88 |
96.90 |
91.36 |
40.49 |
BSL_1 |
9710790 |
1.46G |
9610614 |
1.44G |
98.75 |
96.69 |
90.93 |
40.47 |
BSL_2 |
8528878 |
1.28G |
8442784 |
1.26G |
98.74 |
96.54 |
90.60 |
40.25 |
BSL_3 |
8876886 |
1.33G |
8780592 |
1.31G |
98.70 |
96.64 |
90.83 |
40.74 |